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1. BreakDancer: BreakDancer is an application for detecting structural rearrangements and indels in short read sequencing data BreakDancer, released under GPLv3, is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It include...; 标签：Genomics, Structural variation, InDel discovery
2. Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired end short reads. a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads a pattern growth approach to det...; 标签：InDel discovery, Structural variation
3. CLEVER: CLEVER is a tool to discover structural variations such as (larger) insertions and deletions in genomes from paired-end sequencing reads.; 标签：Genomics, Structural variation, Copy number estimation
4. Breakway: Breakway is a suite of programs that take aligned genomic data and report structural variation breakpoints.; 标签：Whole Genome Resequencing,Genomics, Structural variation, InDel discovery
5. Geneious: Search, organize and analyze genomic and protein information of any size via desktop program that provides publication ready images to enhance the impact of your research.; 标签：Phylogenetics, Sequence analysis, De-novo assembly,Genomics, Population genetics,Metagenomics, Structural variation, RNA-Seq,Epigenomics
6. Ngs-pipeline: Complete solution for human re-sequencing projects; 标签：Personal genomics,Epigenomics, Structural variation
7. Syapse: Syapse is a platform and application suite for bringing together omics and clinical data.; 标签：Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge

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